Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs11633549 chr15:25134049 G/C 5.07E-7 176 25.6 25.63 9.72 KM Plot
PCPG rs11639566 chr16:89890515 C/G 0.000192 173 25.87 21.5 36.37 KM Plot
PCPG rs11639625 chr16:89956253 T/C 0.000157 176 25.77 21.5 36.37 KM Plot
PCPG rs11639774 chr16:85221868 G/A 5.67E-9 172 25.6 24.23 15 KM Plot
PCPG rs11639788 chr16:89807543 G/A 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs11639906 chr16:89798183 T/C 0.00018 175 25.87 20.28 36.37 KM Plot
PCPG rs11639925 chr16:89908250 C/T 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs11640188 chr16:89807732 C/T 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs11640209 chr16:89807828 C/A 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs11640336 chr16:89941153 T/C 0.000206 170 26.22 20.28 36.37 KM Plot
PCPG rs11640899 chr16:10078903 A/G 6.27E-5 177 24.6 30.93 21.58 KM Plot
PCPG rs11641147 chr16:89813589 C/T 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs11641201 chr16:89983276 T/C 0.00015 174 26.27 20.37 3.17 KM Plot
PCPG rs11641552 chr16:89838700 C/A 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs11641631 chr16:89993204 C/A 1.11E-16 171 25.87 20.28 3.17 KM Plot